Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1756Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563. (377 aa)    
Predicted Functional Partners:
kpsC
Capsular polysaccharide export protein KpsC; Identified by similarity to SP:P42217; match to protein family HMM PF05159.
 
  
 0.992
kpsE
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.
 
  
 0.974
kpsT
Capsular polysaccharide export ATP-binding protein; Identified by similarity to SP:P10640; match to protein family HMM PF00005.
 
  
 0.974
SPO0040
ABC transporter, permease protein.
 
  
 0.964
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
 
   
 0.919
SPO0840
Chain length determinant protein, putative; Identified by match to protein family HMM PF02706.
 
 
 0.889
SPO1538
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
 
 0.866
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
  
 0.751
SPO2773
Lipoprotein, putative.
  
     0.723
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
 
  
 0.693
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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