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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1769Hypothetical protein; Identified by Glimmer2; putative. (363 aa)    
Predicted Functional Partners:
SPO0040
ABC transporter, permease protein.
 
     0.782
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
 
     0.780
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
     0.776
SPO0034
Hypothetical protein; Identified by similarity to GB:AAM48703.1.
 
     0.775
SPO1263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.775
SPO3318
Hypothetical protein; Identified by similarity to GB:AAH10441.1.
  
     0.775
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.773
SPO0037
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
     0.773
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
SPO3540
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG032; identified in over 20 other Roseobacter strains'.
  
     0.772
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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