SPO1771 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1771

TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786. (419 aa)

Predicted Functional Partners:

dctP

0.933

SPO1772

0.925

SPO1721

0.825

SPO2545

0.802

nbaC

0.631

SPO2628

0.583

uehA

0.566

SPO2433

0.444

SPO2627

0.427

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1721	SPO1771	SPO1721	SPO1771	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.825
SPO1771	SPO1721	SPO1771	SPO1721	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.825
SPO1771	SPO1772	SPO1771	SPO1772	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP dicarboxylate transporter, DctQ subunit.	0.925
SPO1771	SPO2433	SPO1771	SPO2433	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.444
SPO1771	SPO2545	SPO1771	SPO2545	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.	0.802
SPO1771	SPO2627	SPO1771	SPO2627	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.427
SPO1771	SPO2628	SPO1771	SPO2628	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.583
SPO1771	dctP	SPO1771	SPO1773	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	0.933
SPO1771	nbaC	SPO1771	SPO1774	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.	0.631
SPO1771	uehA	SPO1771	SPO1147	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	Ectoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family.	0.566
SPO1772	SPO1771	SPO1772	SPO1771	TRAP dicarboxylate transporter, DctQ subunit.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.925
SPO1772	dctP	SPO1772	SPO1773	TRAP dicarboxylate transporter, DctQ subunit.	TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	0.940
SPO1772	nbaC	SPO1772	SPO1774	TRAP dicarboxylate transporter, DctQ subunit.	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.	0.854
SPO2433	SPO1771	SPO2433	SPO1771	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.444
SPO2545	SPO1771	SPO2545	SPO1771	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.802
SPO2545	SPO2627	SPO2545	SPO2627	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.473
SPO2627	SPO1771	SPO2627	SPO1771	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.427
SPO2627	SPO2545	SPO2627	SPO2545	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.	0.473
SPO2627	SPO2628	SPO2627	SPO2628	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.922
SPO2628	SPO1771	SPO2628	SPO1771	TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.	0.583

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About