STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dctPTRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm. (327 aa)    
Predicted Functional Partners:
SPO1772
TRAP dicarboxylate transporter, DctQ subunit.
 
  
 0.940
SPO1771
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.932
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.
 
     0.818
SPO2547
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.788
SPO1719
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.783
SPO2882
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
   
 0.726
SPO2626
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.663
uehC
Ectoine/5-hydroxyectoine TRAP transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter large permease family.
 
  
 0.647
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
  
 0.603
SPO0736
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.603
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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