SPO1780 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1780

Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (205 aa)

Predicted Functional Partners:

hydA

0.681

SPO1781

0.619

SPO1788

0.552

SPO1777

0.451

SPO1785

0.428

SPO1776

0.427

betI-2

0.416

SPO1782

0.414

SPO0872

0.401

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0872	SPO1780	SPO0872	SPO1780	Polysaccharide deacetylase family protein.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.401
SPO0872	SPO1781	SPO0872	SPO1781	Polysaccharide deacetylase family protein.	Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.809
SPO1776	SPO1777	SPO1776	SPO1777	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.999
SPO1776	SPO1780	SPO1776	SPO1780	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.427
SPO1776	SPO1781	SPO1776	SPO1781	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.877
SPO1776	SPO1785	SPO1776	SPO1785	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.549
SPO1776	SPO1788	SPO1776	SPO1788	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	ABC transporter, periplasmic substrate-binding protein.	0.558
SPO1776	hydA	SPO1776	SPO1783	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.	0.977
SPO1777	SPO1776	SPO1777	SPO1776	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	0.999
SPO1777	SPO1780	SPO1777	SPO1780	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.451
SPO1777	SPO1781	SPO1777	SPO1781	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.933
SPO1777	SPO1785	SPO1777	SPO1785	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.729
SPO1777	SPO1788	SPO1777	SPO1788	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, periplasmic substrate-binding protein.	0.716
SPO1777	hydA	SPO1777	SPO1783	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.	0.994
SPO1780	SPO0872	SPO1780	SPO0872	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Polysaccharide deacetylase family protein.	0.401
SPO1780	SPO1776	SPO1780	SPO1776	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	0.427
SPO1780	SPO1777	SPO1780	SPO1777	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.451
SPO1780	SPO1781	SPO1780	SPO1781	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.619
SPO1780	SPO1782	SPO1780	SPO1782	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Hypothetical protein; Identified by Glimmer2; putative.	0.414
SPO1780	SPO1785	SPO1780	SPO1785	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.428

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About