STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1787ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (292 aa)    
Predicted Functional Partners:
SPO1788
ABC transporter, periplasmic substrate-binding protein.
 
 
 0.978
SPO1785
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.965
SPO0050
ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.
 
 0.838
SPO3619
Sulfonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.792
tauB
Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
 0.748
SPO1786
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    
0.715
SPO0052
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.699
SPO3620
Sulfonate ABC transporter, periplasmic sulfonate-binding protein.
 
 
 0.606
tauC
Taurine ABC transporter, permease protein; Identified by similarity to SP:Q47539; PMID: 16541231.
 
     0.591
hydA
D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.
 
     0.583
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (54%) [HD]