SPO1788 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1788

ABC transporter, periplasmic substrate-binding protein. (364 aa)

Predicted Functional Partners:

SPO1787

0.978

SPO1786

0.960

SPO1785

0.952

SPO3618

0.835

hydA

0.795

SPO0053

0.783

SPO1777

0.720

SPO0052

0.660

tauB

0.609

SPO3619

0.609

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0052	SPO0053	SPO0052	SPO0053	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.995
SPO0052	SPO1786	SPO0052	SPO1786	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.675
SPO0052	SPO1787	SPO0052	SPO1787	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.699
SPO0052	SPO1788	SPO0052	SPO1788	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, periplasmic substrate-binding protein.	0.660
SPO0052	SPO3618	SPO0052	SPO3618	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.	0.730
SPO0053	SPO0052	SPO0053	SPO0052	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.995
SPO0053	SPO1785	SPO0053	SPO1785	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.720
SPO0053	SPO1788	SPO0053	SPO1788	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, periplasmic substrate-binding protein.	0.783
SPO0053	SPO3619	SPO0053	SPO3619	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Sulfonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.719
SPO0053	tauB	SPO0053	SPO0675	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	0.748
SPO1777	SPO1785	SPO1777	SPO1785	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.734
SPO1777	SPO1786	SPO1777	SPO1786	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.589
SPO1777	SPO1787	SPO1777	SPO1787	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.522
SPO1777	SPO1788	SPO1777	SPO1788	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	ABC transporter, periplasmic substrate-binding protein.	0.720
SPO1777	hydA	SPO1777	SPO1783	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.	0.996
SPO1785	SPO0053	SPO1785	SPO0053	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.720
SPO1785	SPO1777	SPO1785	SPO1777	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.734
SPO1785	SPO1786	SPO1785	SPO1786	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.965
SPO1785	SPO1787	SPO1785	SPO1787	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.965
SPO1785	SPO1788	SPO1785	SPO1788	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, periplasmic substrate-binding protein.	0.952

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About