STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1788ABC transporter, periplasmic substrate-binding protein. (364 aa)    
Predicted Functional Partners:
SPO1787
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.973
SPO1786
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.952
SPO1785
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.939
hydA
D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.
 
    0.824
SPO0053
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.736
SPO3618
Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.
 
  
 0.722
SPO1777
Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
 
     0.716
SPO0052
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.561
SPO1776
Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.
 
     0.558
SPO1780
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.552
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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