Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1790Sulfate/tungstate uptake family ABC transporter, ATP-binding protein; Identified by similarity to GB:CAC40784.1; match to protein family HMM PF00005. (244 aa)    
Predicted Functional Partners:
SPO1789
Sulfate/tungstate uptake family ABC transporter, permease protein; Identified by similarity to GB:CAC40783.1; match to protein family HMM PF00528.
  
 0.995
SPO1791
Sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547.
 
  
 0.984
pstA
Phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974.
  
 
 0.935
pstC
Phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 
 0.934
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
 
 0.852
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
  
  
 0.848
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein.
  
 
 0.834
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
 
     0.703
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.601
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.599
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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