STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1792DNA-binding protein, excisionase family; Identified by match to protein family HMM TIGR01764. (290 aa)    
Predicted Functional Partners:
SPO1789
Sulfate/tungstate uptake family ABC transporter, permease protein; Identified by similarity to GB:CAC40783.1; match to protein family HMM PF00528.
 
    0.819
SPO1791
Sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547.
 
     0.801
moeA
Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
  
 0.776
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
  
 0.769
SPO1794
Formate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583.
 
     0.732
SPO1796
Formate dehydrogenase, alpha subunit, putative; Identified by similarity to PIR:S18213; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.719
SPO1795
Formate dehydrogenase, iron-sulfur subunit, putative; Identified by similarity to SP:P27273; match to protein family HMM PF00037.
 
     0.712
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
 
     0.702
SPO1798
Chaperone, TorD family; Identified by match to protein family HMM PF06192.
 
     0.573
SPO1800
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
    0.569
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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