STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1801Hypothetical protein; Identified by similarity to SP:P24059. (242 aa)    
Predicted Functional Partners:
SPO1804
Hypothetical protein; Identified by similarity to GB:BAC50748.1.
 
     0.914
SPO1802
Hypothetical protein; Identified by similarity to PIR:H95364.
 
     0.909
SPO1805
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.909
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
 
 
 
 0.832
soxD
Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034.
   
 
 0.829
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.824
petB
Ubiquinol--cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.809
ctaE
Cytochrome c oxidase, subunit III; Identified by match to protein family HMM PF00510.
  
 
 0.791
SPO1797
Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
  
     0.773
SPO1799
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.