SPO1808 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1808

Hypothetical protein; Identified by similarity to GB:AAD22393.1. (183 aa)

Predicted Functional Partners:

SPO1807

0.958

SPO1809

0.936

SPO1811

0.897

SPO1810

0.896

adk-2

0.486

SPO1806

0.470

SPO3527

0.400

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1806	SPO1807	SPO1806	SPO1807	Flavin reductase domain protein; Identified by match to protein family HMM PF01613.	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	0.460
SPO1806	SPO1808	SPO1806	SPO1808	Flavin reductase domain protein; Identified by match to protein family HMM PF01613.	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	0.470
SPO1807	SPO1806	SPO1807	SPO1806	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	Flavin reductase domain protein; Identified by match to protein family HMM PF01613.	0.460
SPO1807	SPO1808	SPO1807	SPO1808	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	0.958
SPO1807	SPO1809	SPO1807	SPO1809	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	0.931
SPO1807	SPO1810	SPO1807	SPO1810	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.835
SPO1807	SPO1811	SPO1807	SPO1811	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	Hypothetical protein; Identified by similarity to GB:CAE09733.1.	0.823
SPO1807	adk-2	SPO1807	SPO1812	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.495
SPO1808	SPO1806	SPO1808	SPO1806	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Flavin reductase domain protein; Identified by match to protein family HMM PF01613.	0.470
SPO1808	SPO1807	SPO1808	SPO1807	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	0.958
SPO1808	SPO1809	SPO1808	SPO1809	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	0.936
SPO1808	SPO1810	SPO1808	SPO1810	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.896
SPO1808	SPO1811	SPO1808	SPO1811	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Hypothetical protein; Identified by similarity to GB:CAE09733.1.	0.897
SPO1808	SPO3527	SPO1808	SPO3527	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Identified by match to protein family HMM PF00582.	0.400
SPO1808	adk-2	SPO1808	SPO1812	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.486
SPO1809	SPO1807	SPO1809	SPO1807	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	0.931
SPO1809	SPO1808	SPO1809	SPO1808	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	Hypothetical protein; Identified by similarity to GB:AAD22393.1.	0.936
SPO1809	SPO1810	SPO1809	SPO1810	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.985
SPO1809	SPO1811	SPO1809	SPO1811	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	Hypothetical protein; Identified by similarity to GB:CAE09733.1.	0.919
SPO1809	adk-2	SPO1809	SPO1812	nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.	Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.554

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About