SPO1816 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1816

TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808. (469 aa)

Predicted Functional Partners:

SPO1815

0.947

SPO1814

0.908

SPO1817

0.588

SPO2545

0.566

SPO2627

0.480

SPO2573

0.464

SPO1454

0.450

SPO1818

0.449

dctP

0.434

SPO2628

0.409

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1454	SPO1816	SPO1454	SPO1816	TRAP dicarboxylate transporter, DctP subunit; Identified by match to protein family HMM PF03480.	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	0.450
SPO1814	SPO1815	SPO1814	SPO1815	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.899
SPO1814	SPO1816	SPO1814	SPO1816	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	0.908
SPO1814	SPO1817	SPO1814	SPO1817	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.436
SPO1815	SPO1814	SPO1815	SPO1814	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.899
SPO1815	SPO1816	SPO1815	SPO1816	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	0.947
SPO1815	SPO1817	SPO1815	SPO1817	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.584
SPO1815	SPO1818	SPO1815	SPO1818	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.449
SPO1816	SPO1454	SPO1816	SPO1454	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctP subunit; Identified by match to protein family HMM PF03480.	0.450
SPO1816	SPO1814	SPO1816	SPO1814	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.908
SPO1816	SPO1815	SPO1816	SPO1815	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.947
SPO1816	SPO1817	SPO1816	SPO1817	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.588
SPO1816	SPO1818	SPO1816	SPO1818	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.449
SPO1816	SPO2545	SPO1816	SPO2545	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.	0.566
SPO1816	SPO2573	SPO1816	SPO2573	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.	0.464
SPO1816	SPO2627	SPO1816	SPO2627	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.480
SPO1816	SPO2628	SPO1816	SPO2628	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.409
SPO1816	dctP	SPO1816	SPO1773	TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.	0.434
SPO1817	SPO1814	SPO1817	SPO1814	Membrane protein, putative; Identified by match to protein family HMM PF01925.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.436
SPO1817	SPO1815	SPO1817	SPO1815	Membrane protein, putative; Identified by match to protein family HMM PF01925.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.584

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About