STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1817Membrane protein, putative; Identified by match to protein family HMM PF01925. (249 aa)    
Predicted Functional Partners:
SPO1818
Membrane protein, putative; Identified by match to protein family HMM PF01925.
 
     0.667
SPO1816
TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
  
    0.588
SPO1815
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
       0.584
iseK
Isethionate TRAP transporter; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; PMID: 19933343.
  
     0.566
iseL
Isethionate TRAP transporter; Identified by match to protein family HMM PF04290; PMID: 19933343.
  
     0.525
SPO1814
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
       0.436
SPO3522
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037.
  
    0.431
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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