STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1820Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547. (415 aa)    
Predicted Functional Partners:
SPO1821
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.944
SPO1822
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.916
cpdA-2
Phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
 
     0.854
SPO1823
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.
 
 0.854
SPO1824
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.743
ugpE
SN-glycerol-3-phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 
 0.718
SPO3785
Sugar ABC transporter, permease protein; Identified by similarity to PIR:T46751; match to protein family HMM PF00528.
 
 
 0.718
SPO3786
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.710
ugpA
SN-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
 
 
 0.697
cpdA
Ser/Thr protein phosphatase family protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
 
     0.622
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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