STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1826Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418. (280 aa)    
Predicted Functional Partners:
SPO1825
Glutamine synthetase family protein.
 
    0.918
SPO1827
N-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013.
 
  
 0.880
SPO1828
Identified by match to protein family HMM PF00857.
 
  
 0.862
SPO1830
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.
 
     0.778
SPO1833
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
     0.717
SPO2603
Identified by match to protein family HMM PF05013.
 
  
 0.685
SPO1829
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005.
       0.569
SPO1832
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
     0.509
SPO1834
Identified by match to protein family HMM PF03069.
 
     0.505
SPO2609
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
 
   
 0.470
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.