SPO1839 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1839

Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547. (416 aa)

Predicted Functional Partners:

SPO1837

0.995

SPO1838

0.991

SPO1836

0.905

SPO1823

0.902

SPO3783

0.902

SPO3784

0.902

SPO1840

0.894

SPO1842

0.878

SPO1843

0.840

SPO1835

0.827

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO1823	SPO1835	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.570
SPO1823	SPO1837	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.963
SPO1823	SPO1838	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.	0.952
SPO1823	SPO1839	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547.	0.902
SPO1823	SPO3783	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P10907; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.917
SPO1823	SPO3784	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P02914; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.914
SPO1835	SPO1823	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	0.570
SPO1835	SPO1836	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.	0.816
SPO1835	SPO1837	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.975
SPO1835	SPO1838	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.	0.966
SPO1835	SPO1839	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547.	0.827
SPO1835	SPO1840	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Glucokinase regulator-related protein; Identified by match to protein family HMM PF01380.	0.591
SPO1835	SPO1842	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.416
SPO1835	SPO1843	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	SIS domain protein; Identified by match to protein family HMM PF01380.	0.606
SPO1835	SPO3783	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P10907; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.604
SPO1835	SPO3784	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P02914; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.590
SPO1836	SPO1835	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.816
SPO1836	SPO1837	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.	Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.939
SPO1836	SPO1838	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.	Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.	0.941
SPO1836	SPO1839	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.	Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547.	0.905

page 1 of 5

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About