STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1840Glucokinase regulator-related protein; Identified by match to protein family HMM PF01380. (302 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
  
 0.995
anmK
Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
 0.960
SPO1839
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547.
 
     0.894
SPO1841
Identified by match to protein family HMM PF01869.
 
  
 0.837
SPO1837
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.827
SPO1838
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 
     0.806
SPO1842
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.798
SPO1836
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
 
     0.751
SPO1843
SIS domain protein; Identified by match to protein family HMM PF01380.
 
     0.741
SPO2502
beta-N-acetylhexosaminidase, putative; Identified by similarity to SP:P75949; match to protein family HMM PF00933.
 
  
 0.647
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.