Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1842Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (258 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
  
 0.949
SPO1843
SIS domain protein; Identified by match to protein family HMM PF01380.
 
  
 0.944
SPO1841
Identified by match to protein family HMM PF01869.
 
     0.902
SPO1839
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:Q00749; match to protein family HMM PF01547.
 
 
   0.878
SPO1838
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 
    0.815
SPO1840
Glucokinase regulator-related protein; Identified by match to protein family HMM PF01380.
 
     0.801
SPO1837
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.800
SPO1836
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
 
    0.742
SPO1369
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
   
 0.698
hutC
Histidine utilization repressor; Identified by match to protein family HMM PF00392.
  
   
 0.668
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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