STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1843SIS domain protein; Identified by match to protein family HMM PF01380. (343 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
 0.998
SPO1841
Identified by match to protein family HMM PF01869.
 
  
 0.992
SPO1842
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.952
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
 0.926
SPO1302
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
  
  
 0.917
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
 
   
  0.908
SPO0765
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
     
 0.903
SPO1300
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
     
 0.903
SPO1825
Glutamine synthetase family protein.
     
 0.903
glnA
Glutamine synthetase, type I; Identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
     
 0.903
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.