STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1847AMP-binding enzyme; Identified by match to protein family HMM PF00501. (628 aa)    
Predicted Functional Partners:
SPO1846
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
 
    0.901
SPO0778
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
 
 
0.861
SPO1850
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
    0.861
SPO1014
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
 
0.846
SPO3296
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  
 
0.841
SPO1849
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
 
    0.820
SPO1851
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
    0.806
SPO1848
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
  
    0.754
SPO1968
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.678
SPO0774
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.668
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.