SPO1852 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1852

Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107. (342 aa)

Predicted Functional Partners:

SPO1853

0.786

SPO0849

0.653

SPO1850

0.621

SPO3404

0.621

SPO1846

0.574

SPO1847

0.567

SPO1848

0.559

SPO1849

0.559

SPO1851

0.559

SPO0737

0.508

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO0737	SPO1852	TRAP dicarboxylate transporter family protein, DctQ subunit.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.508
SPO0849	SPO1847	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.418
SPO0849	SPO1852	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.653
SPO1846	SPO1847	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.901
SPO1846	SPO1848	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	0.920
SPO1846	SPO1849	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	0.936
SPO1846	SPO1850	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.949
SPO1846	SPO1851	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.947
SPO1846	SPO1852	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.574
SPO1846	SPO1853	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.450
SPO1847	SPO0849	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.418
SPO1847	SPO1846	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	0.901
SPO1847	SPO1848	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	0.754
SPO1847	SPO1849	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	0.820
SPO1847	SPO1850	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.861
SPO1847	SPO1851	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.806
SPO1847	SPO1852	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.567
SPO1847	SPO1853	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.503
SPO1848	SPO1846	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.	0.920
SPO1848	SPO1847	Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.754

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About