Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
SPO1860Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409. (627 aa)    
Predicted Functional Partners:
phnD
Phosphonate ABC transporter, periplasmic phosphonate-binding protein; Identified by similarity to SP:P16682.
  
  
 0.596
SPO1859
Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541.
     
 0.536
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
   
  
 0.522
SPO1861
Hypothetical protein; Identified by similarity to GB:BAB48658.1.
       0.421
SPO0260
Alkaline phosphatase, putative; Identified by similarity to SP:P42251; match to protein family HMM PF00245; match to protein family HMM TIGR01409.
  
  
 0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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