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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1871Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924. (757 aa)    
Predicted Functional Partners:
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
 
  
 0.782
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
 
  
 0.770
SPO1245
ABC transporter, permease protein; Identified by match to protein family HMM PF00664.
 
   
 0.751
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
     0.689
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
 
     0.688
SPO0553
Glycosyltransferase, group 1.
 
   
 0.658
SPO0549
Hypothetical protein; Identified by similarity to PIR:G97668.
  
     0.645
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
 
     0.634
SPO0301
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
 
     0.633
SPO0554
Glycosyl transferase, group 1 family protein.
  
   
 0.632
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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