STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1878Hypothetical protein; Identified by similarity to GB:AAF26222.1; match to protein family HMM PF05838. (203 aa)    
Predicted Functional Partners:
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.757
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.692
SPO2738
Lipoprotein, putative.
  
     0.642
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.636
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.594
argC-2
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.567
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.562
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.528
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.513
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.