Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1884Identified by match to protein family HMM PF02574. (339 aa)    
Predicted Functional Partners:
SPO1863
Pterin-binding enzyme domain protein; Identified by match to protein family HMM PF00809.
 
 0.998
SPO2160
Corrinoid methyltransferase protein, putative; Identified by similarity to SP:O93657; match to protein family HMM PF02310; match to protein family HMM PF02607.
  
 0.985
metF
5,10-methylenetetrahydrofolate reductase; Identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family.
 
 
 0.973
SPO1862
metFprotein-like protein; Identified by similarity to PIR:B97532.
 
 
 0.969
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
  
 
 0.945
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.937
SPO3344
Cys/Met metabolism PLP-dependent enzyme family protein; Identified by match to protein family HMM PF01053.
  
 
 0.937
SPO1431
O-acetylhomoserine aminocarboxypropyltransferase; Identified by similarity to GB:BAB68505.1; match to protein family HMM PF01053; match to protein family HMM TIGR01326.
  
 
 0.933
SPO0544
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
 
 0.932
SPO0564
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
 
 0.932
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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