Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1895SirA family protein; Identified by similarity to SP:P37618; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family. (77 aa)    
Predicted Functional Partners:
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
   
 0.989
SPO2899
Selenide,water dikinase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02769.
     
 0.640
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
  
 0.609
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683.
       0.569
SPO1800
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
     
 0.519
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
       0.474
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.473
moaD
Molybdopterin converting factor, subunit 1; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682.
   
 
 0.461
moaC
Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.
     
 0.442
SPO1898
Identified by match to protein family HMM PF00067.
       0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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