STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdACytochrome c-type biogenesis protein CcdA; Identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683. (250 aa)    
Predicted Functional Partners:
SPO2314
Periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; Identified by match to protein family HMM TIGR00385.
 
  
 0.774
SPO0331
Thiol:disulfide interchange protein, putative; Identified by similarity to SP:P43221.
 
  
 0.745
SPO1895
SirA family protein; Identified by similarity to SP:P37618; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
       0.569
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.556
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
       0.514
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by similarity to SP:Q00500; match to protein family HMM PF01578; match to protein family HMM TIGR00353.
     
 0.511
SPO1898
Identified by match to protein family HMM PF00067.
       0.493
SPO2877
Hypothetical protein; Identified by similarity to PIR:T36736.
  
    0.469
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
     
 0.439
SPO1881
Cytochrome c biogenesis family protein; Possible subunit of a heme lyase.
     
 0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: very high (>100%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.