STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1898Identified by match to protein family HMM PF00067. (450 aa)    
Predicted Functional Partners:
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
 
 
 0.963
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 
 0.925
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
  
 
 0.819
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
 
     0.754
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.751
SPO0037
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
 
   0.735
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
 
   0.727
SPO3449
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
 
   
 0.704
SPO1769
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.703
SPO0034
Hypothetical protein; Identified by similarity to GB:AAM48703.1.
  
     0.687
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.