Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1903Hypothetical protein; Identified by similarity to GB:CAC46714.1. (73 aa)    
Predicted Functional Partners:
SPO1904
Hypothetical protein; Identified by similarity to GB:AAK23509.1.
       0.836
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.836
SPO0909
Hypothetical protein; Identified by similarity to GB:CAC46921.1; match to protein family HMM PF04380.
  
     0.612
SPO1902
Transcription regulator, TetR family; Identified by match to protein family HMM PF00440.
  
    0.594
tag
DNA-3-methyladenine glycosylase I; Identified by similarity to SP:P05100; match to protein family HMM PF03352.
       0.582
SPO1901
Hypothetical protein; Identified by similarity to GB:AAQ61811.1.
       0.572
SPO0910
Hypothetical protein; Identified by similarity to GB:CAE29805.1.
  
     0.528
SPO1906
Hypothetical protein; Identified by Glimmer2; putative.
       0.519
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
 
    0.504
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.499
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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