STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1907Hypothetical protein; Identified by similarity to GB:AAK24073.1. (151 aa)    
Predicted Functional Partners:
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
   
 0.787
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
   
 0.784
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.744
SPO2490
Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355.
  
   
 0.735
SPO1908
Chromate transporter; Identified by similarity to SP:P17551; match to protein family HMM PF02417.
       0.710
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.704
SPO0083
Exonuclease, putative; Identified by match to protein family HMM PF01612.
  
     0.687
SPO0631
Hypothetical protein.
  
     0.686
SPO3764
Identified by match to protein family HMM PF02798.
  
     0.685
SPO2452
DNA polymerase III, chi subunit, putative; Identified by match to protein family HMM PF04364.
  
     0.676
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.