STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1909Hypothetical protein; Identified by similarity to PIR:AB2272. (151 aa)    
Predicted Functional Partners:
SPO1908
Chromate transporter; Identified by similarity to SP:P17551; match to protein family HMM PF02417.
       0.640
SPO2290
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.
  
     0.639
SPO2289
Hypothetical protein; Identified by similarity to PIR:E82389.
  
     0.631
SPO2746
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.570
SPO1871
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
     0.492
SPO3351
Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146.
 
     0.488
SPO0975
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
       0.483
SPO0942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.459
SPO1427
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.444
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.