Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1915Identified by match to protein family HMM PF00903. (127 aa)    
Predicted Functional Partners:
SPO3351
Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146.
 
     0.679
SPO3485
Hypothetical protein; Identified by similarity to GB:AAN48213.1.
 
     0.626
SPO2755
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.549
SPO3350
Hypothetical protein; Identified by similarity to GB:BAB50844.1.
 
     0.531
SPO1916
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
       0.528
SPO1277
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.506
phrB
Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
       0.431
SPO3610
Hypothetical protein; Identified by similarity to GB:BAC74958.1.
  
     0.427
trgB
Tellurite resistance protein; Identified by similarity to GB:AAB95442.1; match to protein family HMM PF00293; match to protein family HMM TIGR00052.
 
     0.408
SPO0621
Ankrin repeat protein.
 
    0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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