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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1916Aminotransferase, class V; Identified by match to protein family HMM PF00266. (407 aa)    
Predicted Functional Partners:
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
 
 0.946
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
  
 0.870
SPO2165
Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.
 
 0.838
SPO2017
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
 0.773
sufB
FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 0.742
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
 
    0.645
phrB
Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
       0.618
SPO1915
Identified by match to protein family HMM PF00903.
       0.528
SPO2482
Identified by match to protein family HMM PF03372.
   
   0.509
SPO0213
Hypothetical protein; Identified by similarity to GB:AAM40439.1.
   
   0.506
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.