STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrBDeoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family. (481 aa)    
Predicted Functional Partners:
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.
 
   
 0.813
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
       0.699
SPO1482
Hypothetical protein; Identified by similarity to PIR:F97597.
 
   
 0.671
trgB
Tellurite resistance protein; Identified by similarity to GB:AAB95442.1; match to protein family HMM PF00293; match to protein family HMM TIGR00052.
   
 
 0.638
SPO1916
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
       0.617
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.567
SPO1481
Hypothetical protein; Identified by similarity to GB:AAQ64061.1.
 
  
 0.530
SPO1483
Cyclopropane-fatty-acyl-phospholipid synthase, putative; Identified by similarity to SP:P30010; match to protein family HMM PF02353.
 
   
 0.500
SPO1923
Hypothetical protein; Identified by similarity to GB:CAC46199.1.
       0.497
SPO1921
Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291.
   
   0.465
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.