STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1922Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924. (810 aa)    
Predicted Functional Partners:
SPO1923
Hypothetical protein; Identified by similarity to GB:CAC46199.1.
       0.791
SPO1921
Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291.
       0.788
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.610
trgB
Tellurite resistance protein; Identified by similarity to GB:AAB95442.1; match to protein family HMM PF00293; match to protein family HMM TIGR00052.
       0.577
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
       0.515
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.
       0.483
SPO2448
Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427.
  
    0.465
SPO3140
Putative protein TIGR01620; Identified by similarity to GB:BAB48295.1; match to protein family HMM TIGR01620.
  
     0.452
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.436
phrB
Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
       0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.