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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1923Hypothetical protein; Identified by similarity to GB:CAC46199.1. (240 aa)    
Predicted Functional Partners:
SPO1921
Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291.
  
    0.819
SPO1922
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
       0.791
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
 
     0.736
trgB
Tellurite resistance protein; Identified by similarity to GB:AAB95442.1; match to protein family HMM PF00293; match to protein family HMM TIGR00052.
       0.701
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.
       0.510
phrB
Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
       0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.