Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sulPSulfate permease; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815. (582 aa)    
Predicted Functional Partners:
SPO0621
Ankrin repeat protein.
    
 
 0.680
petB
Ubiquinol--cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.590
SPO1030
Identified by match to protein family HMM PF00753.
 
     0.554
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
  
 0.553
phaA
pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039.
  
  
 0.540
SPO3715
Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.510
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
    
 
 0.506
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.506
nuoM
NADH dehydrogenase I, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.
  
 
 0.505
gcdH
glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
   
   0.482
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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