STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1964Hypothetical protein; Identified by similarity to GB:AAL02322.2. (333 aa)    
Predicted Functional Partners:
SPO1968
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
  
 0.839
SPO1965
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.829
SPO1962
Identified by match to protein family HMM PF01636.
 
     0.814
SPO1963
Identified by match to protein family HMM PF00300.
 
     0.814
SPO1967
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
  
 0.798
SPO1966
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
  
 0.785
SPO1961
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
 
    0.736
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.661
SPO1969
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
  
 0.592
SPO1958
acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.
 
     0.550
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.