SPO1965 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO1965

Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (309 aa)

Predicted Functional Partners:

SPO1968

0.925

SPO1967

0.904

SPO1966

0.833

SPO1964

0.829

SPO1962

0.821

SPO1963

0.795

SPO1961

0.724

SPO3654

0.660

SPO1972

0.653

SPO1958

0.630

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO1958	SPO1961	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	0.566
SPO1958	SPO1962	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Identified by match to protein family HMM PF01636.	0.683
SPO1958	SPO1963	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Identified by match to protein family HMM PF00300.	0.557
SPO1958	SPO1964	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Hypothetical protein; Identified by similarity to GB:AAL02322.2.	0.550
SPO1958	SPO1965	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.630
SPO1958	SPO1966	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.	0.606
SPO1958	SPO1967	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.522
SPO1958	SPO1968	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.522
SPO1961	SPO1958	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	0.566
SPO1961	SPO1962	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Identified by match to protein family HMM PF01636.	0.703
SPO1961	SPO1963	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Identified by match to protein family HMM PF00300.	0.745
SPO1961	SPO1964	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Hypothetical protein; Identified by similarity to GB:AAL02322.2.	0.736
SPO1961	SPO1965	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.724
SPO1961	SPO1966	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.	0.684
SPO1961	SPO1967	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.714
SPO1961	SPO1968	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.736
SPO1962	SPO1958	Identified by match to protein family HMM PF01636.	acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189.	0.683
SPO1962	SPO1961	Identified by match to protein family HMM PF01636.	Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.	0.703
SPO1962	SPO1963	Identified by match to protein family HMM PF01636.	Identified by match to protein family HMM PF00300.	0.904
SPO1962	SPO1964	Identified by match to protein family HMM PF01636.	Hypothetical protein; Identified by similarity to GB:AAL02322.2.	0.814

page 1 of 5

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About