Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1972Nodulation protein N; Identified by similarity to SP:P25200; match to protein family HMM PF01575. (162 aa)    
Predicted Functional Partners:
SPO1971
Identified by match to protein family HMM PF00378.
 
 0.821
SPO2548
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
 0.796
SPO2960
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
 0.687
SPO1965
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.679
SPO1968
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.625
SPO1969
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
 0.613
SPO2184
Hypothetical protein; Identified by similarity to SP:P55495.
   
 0.552
paaB
enoyl-CoA hydratase/isomerase PaaB; Identified by similarity to SP:P77467; match to protein family HMM PF00378.
 
 0.545
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 0.541
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
  
 
 0.529
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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