STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1979Acyltransferase, putative; Identified by match to protein family HMM PF01553. (277 aa)    
Predicted Functional Partners:
SPO1980
Hypothetical protein; Identified by similarity to PIR:AB3477.
 
  
 0.992
SPO2489
Hypothetical protein; Identified by similarity to GB:BAC75021.1.
 
  
 0.947
SPO1982
Hypothetical protein; Identified by Glimmer2; putative.
       0.861
SPO1981
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO1983
Hypothetical protein; Identified by similarity to PIR:AB3305.
       0.745
plsY
Putative protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
  
 
 0.627
SPO0369
Acyltransferase family protein; Identified by similarity to SP:P00482; match to protein family HMM PF01553.
  
 
 0.598
cdsA
Phosphatidate cytidylyltransferase; Identified by similarity to SP:P06466; match to protein family HMM PF01148; Belongs to the CDS family.
    
 0.570
SPO0716
Hypothetical protein; Identified by similarity to PIR:D82434.
  
  
 0.536
petP
Transcriptional regulator PetP; Identified by similarity to SP:P31078; match to protein family HMM PF01047.
 
   
 0.514
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.