Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1983Hypothetical protein; Identified by similarity to PIR:AB3305. (198 aa)    
Predicted Functional Partners:
ctrA
DNA-binding response regulator CtrA; Identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486.
  
 0.967
SPO2036
Sensory box sensor histidine kianse/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 0.960
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.890
SPO1980
Hypothetical protein; Identified by similarity to PIR:AB3477.
       0.704
SPO1982
Hypothetical protein; Identified by Glimmer2; putative.
       0.704
SPO1979
Acyltransferase, putative; Identified by match to protein family HMM PF01553.
       0.703
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
  
 
 0.701
SPO2106
Hypothetical protein; Identified by similarity to GB:CAE27296.1.
  
    0.678
SPO1678
Hypothetical protein; Identified by similarity to PIR:AE3305.
  
    0.660
SPO1981
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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