STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2000Identified by match to protein family HMM PF01042. (117 aa)    
Predicted Functional Partners:
SPO2005
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
   0.760
SPO2001
Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.
  
  
 0.758
SPO2003
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.753
SPO2002
Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.
  
    0.750
potA-2
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
       0.742
SPO2004
Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.
       0.741
SPO2007
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
       0.586
SPO2008
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
       0.482
SPO2009
Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528.
       0.482
nnrD
YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
  
  
 0.425
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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