SPO2002 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2002

Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850. (341 aa)

Predicted Functional Partners:

SPO2003

0.869

SPO2007

0.862

SPO2001

0.851

SPO2005

0.843

potA-2

0.822

SPO2004

0.819

SPO2010

0.766

SPO2000

0.749

SPO3153

0.729

SPO0621

0.655

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0621	SPO2002	SPO0621	SPO2002	Ankrin repeat protein.	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	0.655
SPO0621	SPO3153	SPO0621	SPO3153	Ankrin repeat protein.	Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.	0.833
SPO2000	SPO2001	SPO2000	SPO2001	Identified by match to protein family HMM PF01042.	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	0.756
SPO2000	SPO2002	SPO2000	SPO2002	Identified by match to protein family HMM PF01042.	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	0.749
SPO2000	SPO2003	SPO2000	SPO2003	Identified by match to protein family HMM PF01042.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.753
SPO2000	SPO2004	SPO2000	SPO2004	Identified by match to protein family HMM PF01042.	Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.	0.741
SPO2000	SPO2005	SPO2000	SPO2005	Identified by match to protein family HMM PF01042.	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.755
SPO2000	SPO2007	SPO2000	SPO2007	Identified by match to protein family HMM PF01042.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.586
SPO2000	potA-2	SPO2000	SPO2006	Identified by match to protein family HMM PF01042.	Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.741
SPO2001	SPO2000	SPO2001	SPO2000	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Identified by match to protein family HMM PF01042.	0.756
SPO2001	SPO2002	SPO2001	SPO2002	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	0.851
SPO2001	SPO2003	SPO2001	SPO2003	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.810
SPO2001	SPO2004	SPO2001	SPO2004	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.	0.773
SPO2001	SPO2005	SPO2001	SPO2005	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.775
SPO2001	SPO2007	SPO2001	SPO2007	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.745
SPO2001	SPO2010	SPO2001	SPO2010	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.585
SPO2001	potA-2	SPO2001	SPO2006	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.829
SPO2002	SPO0621	SPO2002	SPO0621	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	Ankrin repeat protein.	0.655
SPO2002	SPO2000	SPO2002	SPO2000	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	Identified by match to protein family HMM PF01042.	0.749
SPO2002	SPO2001	SPO2002	SPO2001	Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.	Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.	0.851

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About