STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2004Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853. (308 aa)    
Predicted Functional Partners:
SPO2005
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.838
SPO2002
Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850.
 
     0.820
SPO2003
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.809
SPO2001
Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.
       0.773
potA-2
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
      0.773
SPO2000
Identified by match to protein family HMM PF01042.
       0.741
SPO2007
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 
     0.698
SPO2705
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.687
SPO2010
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.631
SPO2009
Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528.
 
     0.558
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.