STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980. (506 aa)    
Predicted Functional Partners:
SPO2017
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
0.999
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
 0.999
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.995
SPO2619
Hypothetical protein; Identified by similarity to GB:AAK23834.1; match to protein family HMM PF01883.
   
 0.957
SPO2165
Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.
 
 
 0.906
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
  
 0.872
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
  
  
 0.850
SPO2021
Hypothetical protein; Identified by similarity to SP:Q8D461; match to protein family HMM PF01906; Belongs to the UPF0145 family.
  
  
 0.831
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.807
SPO2015
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.802
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.