Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2025Iron-sulfur cluster assembly transcription factor IscR, putative; Identified by similarity to GB:AAN17744.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738. (152 aa)    
Predicted Functional Partners:
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
  
 0.988
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
  
 0.909
SPO2620
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
 
  
 0.864
sufB
FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.
     
 0.734
SPO2017
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
     
 0.676
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
     
 0.676
SPO2026
Hypothetical protein; Identified by similarity to GB:BAB47692.1.
       0.658
SPO2027
Hypothetical protein; Identified by Glimmer2; putative.
       0.647
SPO2028
HD domain protein; Identified by match to protein family HMM PF01966.
       0.618
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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