STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2027Hypothetical protein; Identified by Glimmer2; putative. (79 aa)    
Predicted Functional Partners:
SPO2028
HD domain protein; Identified by match to protein family HMM PF01966.
 
     0.891
SPO2026
Hypothetical protein; Identified by similarity to GB:BAB47692.1.
       0.861
SPO2025
Iron-sulfur cluster assembly transcription factor IscR, putative; Identified by similarity to GB:AAN17744.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738.
       0.698
SPO1198
Hypothetical protein; Identified by similarity to GB:BAC67841.1.
  
     0.590
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
       0.557
SPO1444
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.508
SPO2486
Hypothetical protein; Identified by similarity to GB:AAL49478.1.
  
     0.501
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.496
sufB
FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.
       0.482
SPO1382
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.