SPO2040 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2040

Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (385 aa)

Predicted Functional Partners:

SPO2041

0.634

citE

0.527

SPO2038

0.518

SPO2037

0.504

guaB

0.504

SPO2042

0.454

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO2037	SPO2038	SPO2037	SPO2038	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Identified by match to protein family HMM PF00753.	0.773
SPO2037	SPO2040	SPO2037	SPO2040	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.504
SPO2037	SPO2041	SPO2037	SPO2041	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	0.404
SPO2037	guaB	SPO2037	SPO2039	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.893
SPO2038	SPO2037	SPO2038	SPO2037	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.773
SPO2038	SPO2040	SPO2038	SPO2040	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.518
SPO2038	guaB	SPO2038	SPO2039	Identified by match to protein family HMM PF00753.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.786
SPO2040	SPO2037	SPO2040	SPO2037	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.504
SPO2040	SPO2038	SPO2040	SPO2038	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Identified by match to protein family HMM PF00753.	0.518
SPO2040	SPO2041	SPO2040	SPO2041	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	0.634
SPO2040	SPO2042	SPO2040	SPO2042	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.	0.454
SPO2040	citE	SPO2040	SPO0352	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Citrate lyase, beta subunit; Identified by similarity to SP:P77770; Belongs to the HpcH/HpaI aldolase family.	0.527
SPO2040	guaB	SPO2040	SPO2039	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.504
SPO2041	SPO2037	SPO2041	SPO2037	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.404
SPO2041	SPO2040	SPO2041	SPO2040	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.634
SPO2041	SPO2042	SPO2041	SPO2042	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.	0.705
SPO2041	guaB	SPO2041	SPO2039	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.464
SPO2042	SPO2040	SPO2042	SPO2040	Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.454
SPO2042	SPO2041	SPO2042	SPO2041	Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.	0.705
SPO2042	guaB	SPO2042	SPO2039	Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.425

page 1 of 2

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About