STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmdB3-methylmercaptopropionyl-CoA ligase; Involved in the assimilation of dimethylsulphoniopropionate (DMSP), an important compound in the fixation of carbon in marine phytoplankton. Catalyzes the ATP-dependent ligation of methylmercaptopropionate (MMPA) and CoA to yield methylmercaptopropionate-CoA (MMPA-CoA). It is also active with short-chain-fatty-acid (carboxylic acids up to six carbons in length) ; Belongs to the ATP-dependent AMP-binding enzyme family. (539 aa)    
Predicted Functional Partners:
dmdC
3-methylmercaptopropionyl-CoA dehydrogenase; Involved in the assimilation of dimethylsulphoniopropionate (DMSP), an important compound in the fixation of carbon in marine phytoplankton, by mediating the conversion of 3-(methylthio)propanoyl- CoA (MMPA-CoA) to 3-(methylthio)acryloyl-CoA (MTA-CoA). Belongs to the acyl-CoA dehydrogenase family.
 
 
 0.949
dmdA
DmdA; Involved in the assimilation of dimethylsulphoniopropionate (DMSP), an important compound in the fixation of carbon in marine phytoplankton, by mediating demethylation of dimethlysulfonioproprionate (DMSP) to methyl-mercaptopropionate (MMPA). The intracellular concentration of DMSP is estimated to be 70 mM. Belongs to the GcvT family. DmdA subfamily.
     
 0.928
SPO2915
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.923
SPO0677
AMP-binding protein.
  
  
 
0.920
SPO0298
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.919
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 0.829
SPO0774
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.615
SPO0879
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.605
SPO2538
acyl-CoA dehydrogenase famiy protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.601
SPO1968
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.593
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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